Information for 3-TCAGCCTGGCAGT (Motif 3)

A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T
Reverse Opposite:
C T G A A G T C C G A T A C T G A G T C A G T C C G T A C A T G A C T G A G T C A C G T A C T G G T C A
p-value:1e-13
log p-value:-3.120e+01
Information Content per bp:1.905
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.3 +/- 31.1bp
Average Position of motif in Background69.1 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TCAGCCTGGCAGT
----CTTGGCAA-
 A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

Myb/MA0100.2/Jaspar

Match Rank:2
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TCAGCCTGGCAGT---
------TGGCAGTTGN
 A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

PB0149.1_Myb_2/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TCAGCCTGGCAGT------
---NNNTGGCAGTTGGTNN
 A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCAGCCTGGCAGT
DCTCAGCAGG-----
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TCAGCCTGGCAGT
-----TTGGCA--
 A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TCAGCCTGGCAGT
----NTTGGCANN
 A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TCAGCCTGGCAGT---
------TGGCAGTTGG
 A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TCAGCCTGGCAGT
---VGCTGWCAVB
 A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T
A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCAGCCTGGCAGT
-CAAGATGGCGGC
 A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCAGCCTGGCAGT
-CAGCC-------
 A C G T A G T C C G T A A C T G A G T C G A T C A C G T A C T G A C T G A G T C C G T A A C T G A G C T
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T