Information for 3-GTGRWACCAGTCA (Motif 4)

A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A
Reverse Opposite:
A G C T A C T G C G T A A G T C A C G T A C T G A C T G A C G T C G A T A G C T A G T C C G T A A G T C
p-value:1e-11
log p-value:-2.704e+01
Information Content per bp:1.893
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.5 +/- 26.8bp
Average Position of motif in Background35.8 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTGRWACCAGTCA
-TGACACCTGTCA
 A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A
A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

PKNOX1/MA0782.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GTGRWACCAGTCA
-TGACACCTGTCA
 A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A
A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

TGIF2/MA0797.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTGRWACCAGTCA
-TGACAGCTGTCA
 A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A
A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

TGIF1/MA0796.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTGRWACCAGTCA
-TGACAGCTGTCA
 A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A
A C G T G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTGRWACCAGTCA-----
-CAAATCCAGACATCACA
 A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GTGRWACCAGTCA-
------CCAGACAG
 A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGRWACCAGTCA----
-AAAGACCTGTCAATCC
 A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T
A C G T C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGRWACCAGTCA
-ACTAGCCAATCA
 A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GTGRWACCAGTCA
ACTGAAACCA----
 A C G T A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTGRWACCAGTCA----
-AAAGACCTGTCAATAC
 A C T G A C G T A C T G C T A G C G A T G T C A A G T C A G T C C G T A A C T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T
A C G T G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C