Information for 17-GTGGCCACAGCAG (Motif 33)

A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G
Reverse Opposite:
A G T C A C G T A C T G A T G C C G A T A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C
p-value:1e-6
log p-value:-1.422e+01
Information Content per bp:1.938
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.7 +/- 26.0bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:GTGGCCACAGCAG----
-----CACAGCAGGGGG
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GTGGCCACAGCAG----
--GAGCACAGCAGGACA
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GTGGCCACAGCAG------
----DCHCAGCAGGRGGCC
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTGGCCACAGCAG
-AAACCACAGC--
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTGGCCACAGCAG
-AAACCACAGAN-
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GTGGCCACAGCAG----
--CCACACAGCAGGAGA
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTGGCCACAGCAG-
--GGCCACACCCAN
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G A C G T
A C G T A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GTGGCCACAGCAG
---GCCACACCCA
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G
A C G T A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GTGGCCACAGCAG
-----CACAGN--
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTGGCCACAGCAG
NWAACCACADNN-
 A C T G A C G T A C T G A C T G A G T C A G T C C G T A A G T C C G T A A T C G A G T C T G C A A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T