Information for 2-AGCGCCACCTAGWGGC (Motif 3)

C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C
Reverse Opposite:
C A T G A G T C G T A C C G T A A T G C C A G T C T G A C A T G C T A G C A G T C T A G A C T G A G T C C T A G T A G C G A C T
p-value:1e-21
log p-value:-4.900e+01
Information Content per bp:1.663
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets38.5 +/- 24.3bp
Average Position of motif in Background54.8 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-AGCGCCACCTAGWGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----AGCGCCACCTAGWGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--AGCGCCACCTAGWGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0117.1_Eomes_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGCGCCACCTAGWGGC
NNGGCGACACCTCNNN--
 A C G T A C G T C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGCGCCACCTAGWGGC-
---CCCCCCCGGGGGNN
 C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C A C G T
A C G T A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGCGCCACCTAGWGGC-
NTCNTCCCCTATNNGNN
 C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

KLF5/MA0599.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGCGCCACCTAGWGGC
-GCCCCGCCCC-----
 C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C
A C G T A C T G A G T C A G T C G T A C A G T C C T A G A G T C A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T

POL003.1_GC-box/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGCGCCACCTAGWGGC
NAGCCCCGCCCCCN---
 A C G T C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C
G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGCGCCACCTAGWGGC
-GCTCCGCCCMCY---
 C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C
A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGCGCCACCTAGWGGC-
-----TGCCCCCGGGCA
 C T G A A T C G A G T C T C A G G T A C A G T C G T C A A G T C G A T C A G C T G T C A A T C G G C A T A C T G A C T G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A