Information for 6-CCTGCCCTGCTGGGTG (Motif 9)

G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G
Reverse Opposite:
G T A C C G T A A G T C G T A C T G A C C T G A T C A G T G A C C G T A A C T G C T A G A T C G G A T C G C T A A C T G C A T G
p-value:1e-10
log p-value:-2.503e+01
Information Content per bp:1.667
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif32.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets42.4 +/- 14.7bp
Average Position of motif in Background43.7 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCTGCCCTGCTGGGTG-
--TCNCCTGCTGNGNNN
 G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCTGCCCTGCTGGGTG-
--TNTCCTGCTGTGNNG
 G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCTGCCCTGCTGGGTG
--CCCCCTGCTGTG--
 G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCTGCCCTGCTGGGTG-
--NNTCCTGCTGTGNNN
 G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G A C G T
A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CCTGCCCTGCTGGGTG
-----CCTGCTGAGH-
 G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTGCCCTGCTGGGTG
GGCCYCCTGCTGDGH-
 G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

YY1/MA0095.2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CCTGCCCTGCTGGGTG
GCNGCCATCTTG----
 G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.53
Offset:8
Orientation:forward strand
Alignment:CCTGCCCTGCTGGGTG
--------GCTGTG--
 G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CCTGCCCTGCTGGGTG--
---RGSMTBCTGGGAAAT
 G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G A C G T A C G T
A C G T A C G T A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCTGCCCTGCTGGGTG
GTCATGCHTGRCTGS---
 A C G T A C G T G A T C G T A C C G A T C A T G A T G C G A T C G T A C C G A T A C T G A G T C G A C T A C T G C A T G T A C G G C A T C A T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T