Information for 1-CHTRAGTAAACAD (Motif 1)

G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G
Reverse Opposite:
G A T C C G A T C T A G A C G T C A G T A C G T T C G A G A T C G C A T G A C T C G T A C T A G C A T G
p-value:1e-192
log p-value:-4.423e+02
Information Content per bp:1.619
Number of Target Sequences with motif353.0
Percentage of Target Sequences with motif45.49%
Number of Background Sequences with motif3236.4
Percentage of Background Sequences with motif6.91%
Average Position of motif in Targets50.3 +/- 21.4bp
Average Position of motif in Background50.9 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa2/MA0047.2/Jaspar

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:CHTRAGTAAACAD
NCTAAGTAAACA-
 G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:2
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:CHTRAGTAAACAD---
-CAAAGTAAACANNNN
 G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G A C G T A C G T A C G T
A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.96
Offset:2
Orientation:forward strand
Alignment:CHTRAGTAAACAD
--AAAGTAAACA-
 G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.96
Offset:2
Orientation:forward strand
Alignment:CHTRAGTAAACAD
--AAAGTAAACA-
 G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:5
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CHTRAGTAAACAD--
NCWRWGTAAACANSV
 G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.95
Offset:2
Orientation:reverse strand
Alignment:CHTRAGTAAACAD
--WAAGTAAAYA-
 G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G
A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:CHTRAGTAAACAD-
--TATGTAAACANG
 G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G A C G T
A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---CHTRAGTAAACAD-
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

FOXC2/MA0846.1/Jaspar

Match Rank:9
Score:0.93
Offset:2
Orientation:forward strand
Alignment:CHTRAGTAAACAD-
--TAAGTAAACAAA
 G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G A C G T
A C G T A C G T G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

FOXC1/MA0032.2/Jaspar

Match Rank:10
Score:0.92
Offset:2
Orientation:forward strand
Alignment:CHTRAGTAAACAD
--TATGTAAATAT
 G T A C G A T C G C A T C T G A C G T A C T A G A G C T G T C A G T C A G T C A A G T C C G T A C T A G
A C G T A C G T G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T