Information for 7-CCAAGAACAAGGG (Motif 9)

A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G
Reverse Opposite:
A G T C A T G C G A T C A G C T A C G T A C T G A G C T A G C T A G T C A C G T A C G T A C T G A T C G
p-value:1e-10
log p-value:-2.531e+01
Information Content per bp:1.816
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.6 +/- 32.1bp
Average Position of motif in Background59.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CCAAGAACAAGGG-
----GAACAATGGN
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCAAGAACAAGGG----
ATAAGAACAAAGGACTA
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCAAGAACAAGGG---
NNAGGGACAAGGGCNC
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G A C G T A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCAAGAACAAGGG
---GGAACAAAGR
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCAAGAACAAGGG
CCAGGAACAG---
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CCAAGAACAAGGG
---AAAACAAAGG
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CCAAGAACAAGGG
---AAAACAATGG
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAAGAACAAGGG
-CAAGGHCANV--
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCAAGAACAAGGG----
AGAAGAACAAAGGACTA
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCAAGAACAAGGG
-----AACAAAGG
 A T G C A G T C G T C A C G T A A C T G C T G A C T G A G T A C G T C A C T G A C T A G T A C G A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G