Information for 17-CAKGMAKWTCHCA (Motif 29)

A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A T C G C G T A G C T A G T A C A C G T C A T G T A G C G T C A A C G T A C T G
p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.673
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.06%
Number of Background Sequences with motif225.5
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets53.4 +/- 25.0bp
Average Position of motif in Background49.6 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAKGMAKWTCHCA-
TCATGAATWATTCAT
 A C G T A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAKGMAKWTCHCA-
WYATGCATWATGCAT
 A C G T A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAKGMAKWTCHCA
-ATGCATAATTCA
 A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A
A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAKGMAKWTCHCA
NACAGGAAAT-----
 A C G T A C G T A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAKGMAKWTCHCA
ACAGGAAGTG----
 A C G T A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAKGMAKWTCHCA
AACAGGAAGT-----
 A C G T A C G T A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:7
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CAKGMAKWTCHCA
AAAATACATGTAATACT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CAKGMAKWTCHCA
TBGCACGCAA------
 A C G T A C G T A C G T A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAKGMAKWTCHCA
NACAGGAAAT-----
 A C G T A C G T A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CAKGMAKWTCHCA
TAAATACATGTAAAATT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C A G T A T C G G T A C G T C A C A T G C G A T C G A T T A G C G C A T A G T C C G T A
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T A C G T