Information for 12-AGRATGAATTTCT (Motif 19)

C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A C T G A C G T A A C G T C G A T A G T C C G T A A C G T A G C T A G T C A G C T
p-value:1e-10
log p-value:-2.450e+01
Information Content per bp:1.853
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif17.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets47.4 +/- 29.7bp
Average Position of motif in Background50.4 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGRATGAATTTCT
ACTATGAATGAATGAT-
 A C G T A C G T A C G T A C G T C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGRATGAATTTCT
NNTNTCATGAATGT--
 A C G T A C G T A C G T C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGRATGAATTTCT
---ATGMATATDC
 C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGRATGAATTTCT
---ATGAATATTC
 C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PB0169.1_Sox15_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGRATGAATTTCT-
TTGAATGAAATTCGA
 A C G T C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGRATGAATTTCT
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A C G T C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGRATGAATTTCT
AGGGAAGTCATTTCT
 A C G T A C G T C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

TEAD1/MA0090.2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGRATGAATTTCT
NTGGAATGTG-----
 A C G T A C G T C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T
C T G A G C A T T C A G C A T G C G T A T C G A C A G T A C T G A G C T C T A G A C G T A C G T A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AGRATGAATTTCT
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGRATGAATTTCT--
GAAGATCAATCACTAA
 A C G T C T G A C T A G T C G A C G T A A C G T C T A G C G T A C G T A C G A T G A C T A C G T A G T C A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A