Information for 5-RAGSTCAGTSYAA (Motif 6)

C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T C T A G A T G C C G T A A T G C A C G T A T C G C G T A A T C G A G T C A C G T A G T C
p-value:1e-11
log p-value:-2.717e+01
Information Content per bp:1.869
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.8 +/- 21.1bp
Average Position of motif in Background47.5 +/- 15.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-RAGSTCAGTSYAA
TRAGGTCA------
 A C G T C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--RAGSTCAGTSYAA
CAAAGGTCAG-----
 A C G T A C G T C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RAGSTCAGTSYAA
AAGGTCAC-----
 C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RAGSTCAGTSYAA
AGRGGTCA------
 A C G T C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---RAGSTCAGTSYAA
ATCAAGGTCA------
 A C G T A C G T A C G T C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RAGSTCAGTSYAA
TCAAGGTCAN-----
 A C G T A C G T C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RAGSTCAGTSYAA
-AGGTCA------
 C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RAGSTCAGTSYAA
TCAAGGTCAT-----
 A C G T A C G T C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----RAGSTCAGTSYAA
ANGNAAAGGTCA------
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RAGSTCAGTSYAA
CAGGTAAGTAT--
 C T A G C G T A A C T G A T G C A C G T A T G C C G T A A T C G A C G T A T C G A G T C C G T A C G T A
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T A C G T A C G T