Information for 4-GAGTTGGAGGCTC (Motif 5)

A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C
Reverse Opposite:
C T A G C G T A A T C G A G T C A G T C A C G T A T G C G T A C G T C A C G T A A G T C A C G T A G T C
p-value:1e-14
log p-value:-3.255e+01
Information Content per bp:1.862
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.6 +/- 23.4bp
Average Position of motif in Background90.2 +/- 3.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0114.1_Egr1_2/Jaspar

Match Rank:1
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GAGTTGGAGGCTC
TGCGGAGTGGGACTGG-
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTGGAGGCTC
TGAGTGACAGSC--
 A C G T A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGTTGGAGGCTC-
GGGGTCAAAGGTCA
 A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GAGTTGGAGGCTC
NGCGTGGGCGGR--
 A C G T A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C
A C G T T A C G G A T C A C T G A C G T C T A G A C T G A C T G G A T C C T A G C A T G C T A G A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGTTGGAGGCTC-
GGGGTCAAAGGTCA
 A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTGGAGGCTC
NTGATTGACAGN---
 A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTGGAGGCTC
BTGABTGACAGS---
 A C G T A C G T A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAGTTGGAGGCTC-
GGGGTCAAAGGTCA
 A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C A C G T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GAGTTGGAGGCTC--
-----TCAAGGTCAT
 A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GAGTTGGAGGCTC-
GAGGTCAAAGGTCA
 A C T G C G T A A C T G A C G T A C G T A C T G A T C G C G T A C T A G C T A G A T G C A C G T A G T C A C G T
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A