Information for 9-CMSMAGGMTRTTT (Motif 12)

A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T
Reverse Opposite:
C T G A C G T A G T C A A G C T C G T A A C T G A G T C A G T C A C G T A C G T T A C G A C T G A C T G
p-value:1e-8
log p-value:-2.063e+01
Information Content per bp:1.834
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.1 +/- 21.0bp
Average Position of motif in Background58.0 +/- 9.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CMSMAGGMTRTTT-
---AAGGATATNTN
 A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T A C G T
A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CMSMAGGMTRTTT--
CTACTAGGATGTNNTN
 A C G T A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CMSMAGGMTRTTT-----
------KCTATTTTTRGH
 A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CMSMAGGMTRTTT
-ANCAGGATGT--
 A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T
A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CMSMAGGMTRTTT
NTNGCCTCAGGCNNN--
 A C G T A C G T A C G T A C G T A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T A C G T A C G T

FOXD2/MA0847.1/Jaspar

Match Rank:6
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:CMSMAGGMTRTTT--
--------TGTTTAC
 A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G C G A T C A G T C A G T C T G A A G T C

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CMSMAGGMTRTTT
AGCCTCAGGCA----
 A C G T A C G T A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:8
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CMSMAGGMTRTTT-----
------GCTATTTTTGGM
 A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C

MF0005.1_Forkhead_class/Jaspar

Match Rank:9
Score:0.57
Offset:8
Orientation:forward strand
Alignment:CMSMAGGMTRTTT----
--------TGTTTATTT
 A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CMSMAGGMTRTTT
AGCCTCAGGCA----
 A C G T A C G T A G T C G T A C A T G C G T C A C G T A A C T G A C T G G T A C A C G T C T G A A C G T A C G T A G C T
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T