p-value: | 1e-9 |
log p-value: | -2.213e+01 |
Information Content per bp: | 1.691 |
Number of Target Sequences with motif | 9.0 |
Percentage of Target Sequences with motif | 1.20% |
Number of Background Sequences with motif | 23.3 |
Percentage of Background Sequences with motif | 0.05% |
Average Position of motif in Targets | 54.5 +/- 27.9bp |
Average Position of motif in Background | 44.7 +/- 25.2bp |
Strand Bias (log2 ratio + to - strand density) | -0.7 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer
Match Rank: | 1 |
Score: | 0.68 |
Offset: | 4 |
Orientation: | forward strand |
Alignment: | GMCATTGCCAAGG ----TTGCCAAG- |
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NFIA/MA0670.1/Jaspar
Match Rank: | 2 |
Score: | 0.68 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | GMCATTGCCAAGG ---GGTGCCAAGT |
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NFIX/MA0671.1/Jaspar
Match Rank: | 3 |
Score: | 0.63 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | GMCATTGCCAAGG ---CGTGCCAAG- |
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PB0055.1_Rfx4_1/Jaspar
Match Rank: | 4 |
Score: | 0.62 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | GMCATTGCCAAGG-- NNCGTTGCTATGGNN |
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Rfx1/MA0509.1/Jaspar
Match Rank: | 5 |
Score: | 0.62 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | GMCATTGCCAAGG---- ---GTTGCCATGGNAAC |
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ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer
Match Rank: | 6 |
Score: | 0.61 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | GMCATTGCCAAGG-- -----TGCCCAGNHW |
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NFIC/MA0161.1/Jaspar
Match Rank: | 7 |
Score: | 0.61 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | GMCATTGCCAAGG -----TGCCAA-- |
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Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer
Match Rank: | 8 |
Score: | 0.59 |
Offset: | 6 |
Orientation: | forward strand |
Alignment: | GMCATTGCCAAGG--- ------NTCAAGGTCA |
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PB0056.1_Rfxdc2_1/Jaspar
Match Rank: | 9 |
Score: | 0.58 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | GMCATTGCCAAGG-- NCCGTTGCTANGNGN |
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PB0054.1_Rfx3_1/Jaspar
Match Rank: | 10 |
Score: | 0.58 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----GMCATTGCCAAGG------ NTNNNNNGTTGCTANGGNNCANA |
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