Information for 9-AAAGGCHATTGCC (Motif 9)

T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C
Reverse Opposite:
C T A G C A T G A G T C T G C A T G C A A G C T C T A G C T A G T G A C G T A C C G A T A G C T A C G T
p-value:1e-12
log p-value:-2.821e+01
Information Content per bp:1.719
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif26.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets53.6 +/- 24.1bp
Average Position of motif in Background54.6 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAAGGCHATTGCC
-AAGGCAAGTGT-
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

HES7/MA0822.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AAAGGCHATTGCC-
--TGGCACGTGCCA
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C A C G T
A C G T A C G T G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAAGGCHATTGCC--
-NAGGTCANTGACCT
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C A C G T A C G T
A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

HES5/MA0821.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AAAGGCHATTGCC-
--TGGCACGTGCCG
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C A C G T
A C G T A C G T G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAAGGCHATTGCC
CAAGGHCANV---
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

PH0007.1_Barx1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAAGGCHATTGCC----
-AAAGTAATTAGTGAAT
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C A C G T A C G T A C G T A C G T
A C G T G T C A G T C A T C G A T A C G G A C T T G C A G T C A A C G T A C G T C T G A A T C G A G C T C A T G G C T A C G T A G C A T

PH0009.1_Bsx/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AAAGGCHATTGCC----
-CAGGTAATTACCTCAG
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C A C G T A C G T A C G T A C G T
A C G T T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AAAGGCHATTGCC--
-CAGGCCNNGGCCNN
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C A C G T A C G T
A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AAAGGCHATTGCC
---GGGAATTTCC
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C
A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:AAAGGCHATTGCC
---GGCVGTTR--
 T G C A C T G A C G T A A C T G A C T G A G T C G A T C C T G A A C G T A C G T A C T G G T A C G A T C
A C G T A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A A C G T A C G T