Information for 2-CAGGGTGAMCTGG (Motif 4)

G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G
Reverse Opposite:
G A T C A G T C G T C A A C T G A C T G A C G T A G T C G C T A T A G C G A T C A G T C C G A T C A T G
p-value:1e-16
log p-value:-3.887e+01
Information Content per bp:1.786
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.5 +/- 30.5bp
Average Position of motif in Background45.6 +/- 18.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESR2/MA0258.2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CAGGGTGAMCTGG
AGGNCANNGTGACCT--
 A C G T A C G T A C G T A C G T G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CAGGGTGAMCTGG
GGTCANNGTGACCTN-
 A C G T A C G T A C G T G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CAGGGTGAMCTGG
----GTGACCTT-
 G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G
A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CAGGGTGAMCTGG
-----TGACCT--
 G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CAGGGTGAMCTGG
-----TGACCTYA
 G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

ESR1/MA0112.3/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGGGTGAMCTGG
AAGGTCACGGTGACCTG-
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CAGGGTGAMCTGG--
-----TGACCTTGAT
 G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CAGGGTGAMCTGG-
----NTGACCTTGA
 G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G A C G T
A C G T A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGGGTGAMCTGG----
-NNNNTGACCCGGCGCG
 G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G A C G T A C G T A C G T A C G T
A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAGGGTGAMCTGG----
-NNNGTGACCTTTGNNN
 G T A C C G T A A C T G C T A G A T C G C G A T A C T G C G T A G T A C A G T C A C G T T A C G C T A G A C G T A C G T A C G T A C G T
A C G T G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A