Information for 1-TRAGTAAACA (Motif 1)

G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
Reverse Opposite:
C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T G A C T C G T A
p-value:1e-174
log p-value:-4.007e+02
Information Content per bp:1.726
Number of Target Sequences with motif336.0
Percentage of Target Sequences with motif45.10%
Number of Background Sequences with motif3466.8
Percentage of Background Sequences with motif7.31%
Average Position of motif in Targets50.4 +/- 22.2bp
Average Position of motif in Background49.7 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:TRAGTAAACA
AAAGTAAACA
 G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:TRAGTAAACA
AAAGTAAACA
 G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:3
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-TRAGTAAACA----
CAAAGTAAACANNNN
 A C G T G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:4
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:TRAGTAAACA
WAAGTAAAYA
 G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:5
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:TRAGTAAACA--
TATGTAAACANG
 G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

Foxa2/MA0047.2/Jaspar

Match Rank:6
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--TRAGTAAACA
NCTAAGTAAACA
 A C G T A C G T G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:7
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--TRAGTAAACA---
NCWRWGTAAACANSV
 A C G T A C G T G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXC2/MA0846.1/Jaspar

Match Rank:8
Score:0.93
Offset:0
Orientation:forward strand
Alignment:TRAGTAAACA--
TAAGTAAACAAA
 G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.93
Offset:-5
Orientation:forward strand
Alignment:-----TRAGTAAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A C G T G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

FOXC1/MA0032.2/Jaspar

Match Rank:10
Score:0.92
Offset:0
Orientation:forward strand
Alignment:TRAGTAAACA-
TATGTAAATAT
 G C A T C T G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T