Information for 24-TCAATATTGAMYY (Motif 34)

A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T
Reverse Opposite:
C T G A T C A G A C T G A C G T A G T C C G T A C G T A A C G T C G T A A C G T C G A T A C T G C G T A
p-value:1e-6
log p-value:-1.424e+01
Information Content per bp:1.892
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.8 +/- 22.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TCAATATTGAMYY
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----TCAATATTGAMYY
NNTNNCAATATTAG---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TCAATATTGAMYY-
---ATATTTACATA
 A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T A C G T
A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

FOXC1/MA0032.2/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TCAATATTGAMYY-
---ATATTTACATA
 A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T A C G T
A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TCAATATTGAMYY
ATGAATATTC----
 A C G T A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCAATATTGAMYY----
-NNNTATTGAATTGNNN
 A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T A C G T A C G T A C G T A C G T
A C G T T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0197.1_Zfp105_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCAATATTGAMYY--
NAAANTTATTGAANCAN
 A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TCAATATTGAMYY
---NTATYGATCH
 A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T
A C G T A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:TCAATATTGAMYY--
-----ATTGATTYND
 A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TCAATATTGAMYY
CTCATGAATATTCAT--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T C G T A A C G T A C G T A C T G C G T A G T A C A G C T A G C T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T A C G T