Information for 19-TGRCAAATATTWG (Motif 27)

C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C C G A T C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C T G G A T C A G T C C G T A
p-value:1e-8
log p-value:-1.864e+01
Information Content per bp:1.915
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.8 +/- 25.4bp
Average Position of motif in Background42.1 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGRCAAATATTWG----
---CTAATATTGCTAAA
 C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGRCAAATATTWG----
---CTAATATTGCTAAA
 C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGRCAAATATTWG
----AATTATT--
 C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G
A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGRCAAATATTWG
TGTCANYT-----
 C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGRCAAATATTWG
RHTGWCAR-------
 A C G T A C G T C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGRCAAATATTWG
GGTGCCAAGT-----
 A C G T A C G T C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGRCAAATATTWG
-GACATATGTT--
 C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G
A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGRCAAATATTWG
TTGCCAAG------
 A C G T C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TGRCAAATATTWG
GAATGACGAATAAC--
 A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TGRCAAATATTWG
ACCGTGACTAATTNN--
 A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A C G T A C G T A A C G T G T C A A C G T A C G T C G T A A C T G
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A A C G T A C G T