Information for 8-RGRGCCCKTGSCA (Motif 14)

C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A
Reverse Opposite:
A C G T A C T G A T G C A G T C T G C A T G C A C T A G T C A G A T C G A G T C G A C T A T G C G A T C
p-value:1e-10
log p-value:-2.509e+01
Information Content per bp:1.808
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.9 +/- 27.3bp
Average Position of motif in Background51.5 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:RGRGCCCKTGSCA-
------CTTGGCAA
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

HES7/MA0822.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:RGRGCCCKTGSCA
-TGGCACGTGCCA
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A
A C G T G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A

HES5/MA0821.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RGRGCCCKTGSCA
-TGGCACGTGCCG
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A
A C G T G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:RGRGCCCKTGSCA--
-----NNTTGGCANN
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RGRGCCCKTGSCA--
ATTGCCTCAGGCAAT
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A A C G T A C G T
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T

HEY2/MA0649.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RGRGCCCKTGSCA
--GGCACGTGNC-
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A
A C G T A C G T A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:RGRGCCCKTGSCA--
------NTTGGCANN
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RGRGCCCKTGSCA
-GAGSCCGAGC--
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A
A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:RGRGCCCKTGSCA
--AGCCTCAGGCA
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:RGRGCCCKTGSCA
--TGACCTTGAN-
 C T A G A T C G C T G A A C T G A T G C A G T C A G T C A C G T A C G T A C T G A T C G A G T C G T C A
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T