Information for 21-CTTTTATTCGTGT (Motif 29)

A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A G T A C A C T G C G T A C G T A A C G T C G T A C G T A C G T A C G T A A C T G
p-value:1e-6
log p-value:-1.544e+01
Information Content per bp:1.951
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.0 +/- 17.6bp
Average Position of motif in Background54.2 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTTTTATTCGTGT
-TTTTATTRGN--
 A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTATTCGTGT
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTTTATTCGTGT
NTTTTATTGG---
 A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTTTTATTCGTGT
-TTTTATKRGG--
 A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTTTATTCGTGT-
TTTTTTTTCNNGTN
 A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T A C G T
G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTTTTATTCGTGT
TTTTTATTGG---
 A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTATTCGTGT
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXB13/MA0901.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTTTTATTCGTGT
NTTTTATTGG---
 A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTTTTATTCGTGT
-TTTAAT------
 A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTTTTATTCGTGT
-TTTTATTGC---
 A G T C A C G T A C G T A C G T C G A T C G T A A C G T A C G T A G T C A C T G A C G T A C T G A C G T
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T