Information for 20-GCAGGCAAACTCC (Motif 26)

A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C
Reverse Opposite:
A C T G C T A G C G T A A C T G A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.869e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.8 +/- 20.9bp
Average Position of motif in Background65.5 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCAAACTCC
TBGCACGCAA-----
 A C G T A C G T A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCAGGCAAACTCC-
----GGAAATTCCC
 A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCAGGCAAACTCC-
----GGAAATTCCC
 A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCAGGCAAACTCC--
---GGGAAATCCCCN
 A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCAGGCAAACTCC---
AGCGGCACACACGCAA
 A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GCAGGCAAACTCC-
----GGAAANCCCC
 A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCAGGCAAACTCC
-AAGGCAAGTGT-
 A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCAGGCAAACTCC
---GGAAATCCCC
 A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCAGGCAAACTCC
CCAGGAACAG---
 A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCAGGCAAACTCC---
GGGGTCAAAGTCCAAT
 A C T G A G T C C G T A C T A G A C T G A G T C C G T A G T C A C G T A A G T C C G A T A G T C A G T C A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T