Information for 9-GCHTGGTTBATTTCCC (Motif 22)

C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G C T G A G T C A C G T A A G C T T C G A G T C A C G T A A G T C G T A C C G T A C A T G A C T G A G T C
p-value:1e-9
log p-value:-2.213e+01
Information Content per bp:1.758
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.6 +/- 31.8bp
Average Position of motif in Background43.3 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCHTGGTTBATTTCCC
---TGATTTATGGCC-
 C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C
A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCHTGGTTBATTTCCC
NNANTGATTGATNTTN-
 A C G T C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCHTGGTTBATTTCCC
--ATGATKGATGRC--
 C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCHTGGTTBATTTCCC
---TGATTTATGGCC-
 C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C
A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCHTGGTTBATTTCCC
NNANTGATTGATNNNN-
 A C G T C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCHTGGTTBATTTCCC----
---NNNTTTGTTTACNTTNN
 C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCHTGGTTBATTTCCC----
---NNNTTTGTTTACNTTNN
 C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCHTGGTTBATTTCCC
---TGATTTATGGC--
 C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T

DUX4/MA0468.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCHTGGTTBATTTCCC
---TGATTAAATTA--
 C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C
A C G T A C G T A C G T C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCHTGGTTBATTTCCC
-GAATGTTTGTTT---
 C T A G G T A C G A T C A C G T A C T G C T A G A C G T A C G T A C G T C T G A A C G T A C G T A G C T G T A C A G T C A G T C
A C G T C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T A C G T A C G T A C G T