Information for 11-SCCTAGAGGGCAG (Motif 8)

A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G
Reverse Opposite:
G T A C A C G T A T C G A T G C A G T C G T A C C G A T A G T C A C G T C T G A C T A G A C T G A T G C
p-value:1e-9
log p-value:-2.200e+01
Information Content per bp:1.831
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif23.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets57.3 +/- 26.6bp
Average Position of motif in Background52.2 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----SCCTAGAGGGCAG---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:SCCTAGAGGGCAG
---CAAAGGTCAG
 A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-SCCTAGAGGGCAG
TGCCCNNAGGGCA-
 A C G T A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-SCCTAGAGGGCAG
TGCCCTNAGGGCA-
 A C G T A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-SCCTAGAGGGCAG
TGCCCTNAGGGCA-
 A C G T A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----SCCTAGAGGGCAG--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--SCCTAGAGGGCAG-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:SCCTAGAGGGCAG
----TNNGGGCAG
 A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:SCCTAGAGGGCAG
----AGRGGTCA-
 A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:SCCTAGAGGGCAG
----TRAGGTCA-
 A T C G T G A C A G T C A G C T C G T A A C T G C G T A A C T G A C T G A T C G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T