Information for 5-TAAATCAACAAAGGGY (Motif 5)

C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T
Reverse Opposite:
C T G A G A T C A G T C A G T C G A C T G A C T C G A T A C T G A C G T A C G T C A T G C T G A A C G T C A G T A C G T C G T A
p-value:1e-15
log p-value:-3.497e+01
Information Content per bp:1.762
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.4 +/- 20.0bp
Average Position of motif in Background25.2 +/- 1.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXC2/MA0846.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TAAATCAACAAAGGGY
TAAGTAAACAAA----
 C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:TAAATCAACAAAGGGY
------AACAAAGG--
 C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TAAATCAACAAAGGGY
-AAATAAACA------
 C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TAAATCAACAAAGGGY--
-ATAAGAACAAAGGACTA
 C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T A C G T A C G T
A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TAAATCAACAAAGGGY--
-AGAAGAACAAAGGACTA
 C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T A C G T A C G T
A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TAAATCAACAAAGGGY
WWATRTAAACAN-----
 A C G T C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T
G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:TAAATCAACAAAGGGY
-----GAACAATGGN-
 C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TAAATCAACAAAGGGY
-AAACAAACATTC---
 C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T
A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TAAATCAACAAAGGGY
TATGTAAATAT-----
 C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T

PB0019.1_Foxl1_1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAAATCAACAAAGGGY
TAAATGTAAACAAAGGT-
 A C G T A C G T C G A T C G T A G T C A C G T A A G C T G T A C C G T A C G T A A G T C C G T A C G T A C T G A A C T G A C T G C T A G A G C T
C G A T C G T A C G T A C G T A G C A T C T A G C G A T G T C A C G T A C T G A A G T C C G T A G C T A C G T A T A C G T C A G A C G T A C G T