Information for 18-AAGTACACGA (Motif 42)

C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A
Reverse Opposite:
A G C T G T A C C T A G C G A T A C T G G C A T C G T A A G T C G C A T G A C T
p-value:1e-1
log p-value:-4.439e+00
Information Content per bp:1.743
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif29.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets65.3 +/- 16.7bp
Average Position of motif in Background36.6 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AAGTACACGA---
TTCNAAGTACTTNNNNN
 A C G T A C G T A C G T A C G T C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

PH0116.1_Nkx2-9/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AAGTACACGA---
TTTTAAGTACTTAAATT
 A C G T A C G T A C G T A C G T C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AAGTACACGA----
CGAAGCACACAAAATA
 A C G T A C G T C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAGTACACGA
CCAGGAACAG--
 A C G T A C G T C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AAGTACACGA----
AAAAAGTAAACAAAGAC
 A C G T A C G T A C G T C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGTACACGA
AAGGTCAC--
 C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AAGTACACGA-
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PH0117.1_Nkx3-1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAGTACACGA---
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A C G T C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGTACACGA
CAAGGHCANV-
 A C G T C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAGTACACGA----
AAAAAGTAAACAAACAC
 A C G T A C G T A C G T C T G A C G T A T C A G C G A T C G T A T G A C G C T A A G T C C A T G T C G A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C