Information for 17-TTGCATATGC (Motif 41)

A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C C G T A C G T A
p-value:1e-4
log p-value:-9.429e+00
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.8 +/- 15.7bp
Average Position of motif in Background53.6 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TTGCATATGC
ATGMATATDC
 A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TTGCATATGC
ATTTGCATAT--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TTGCATATGC
ATTTGCATAA--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----TTGCATATGC
TTCATTTGCATAT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T

Bhlha15/MA0607.1/Jaspar

Match Rank:5
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TTGCATATGC
--ACATATGG
 A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C
A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G

POU2F1/MA0785.1/Jaspar

Match Rank:6
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTGCATATGC
AATTTGCATANT-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TTGCATATGC
ATTTGCATA---
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTGCATATGC
ATTTGCATA---
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:9
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTGCATATGC-
-ANCATATGGT
 A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C A C G T
A C G T C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T

Atoh1/MA0461.2/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTGCATATGC-
-ANCATATGTT
 A C G T A C G T A C T G A G T C C G T A A C G T C G T A A C G T A C T G A G T C A C G T
A C G T C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T