Information for 14-ACAGGTCACC (Motif 38)

C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G C G T A G T A C A G T C A G C T A C T G A C G T
p-value:1e-7
log p-value:-1.749e+01
Information Content per bp:1.934
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.6 +/- 18.3bp
Average Position of motif in Background60.2 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----ACAGGTCACC--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ACAGGTCACC--
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ACAGGTCACC
--AGGTCA--
 C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:ACAGGTCACC
-AAGGTCAC-
 C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:ACAGGTCACC
AGRGGTCA--
 C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ACAGGTCACC
TRAGGTCA--
 C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ACAGGTCACC--
CAAAGGTCAAGGG
 A C G T C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ACAGGTCACC
ANGNAAAGGTCA--
 A C G T A C G T A C G T A C G T C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ACAGGTCACC-------
--AGGTCACCCTGACCT
 C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ACAGGTCACC
CAAAGGTCAG-
 A C G T C G T A A G T C C T G A A C T G A C T G A C G T A G T C C G T A A G T C A G T C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T