Information for 20-AGSYTCAAARTCAACA (Motif 26)

C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A
Reverse Opposite:
G A C T A C T G A G C T C G A T A C T G C G T A A G C T A C G T A G C T C G A T C T A G C G T A C T G A A T G C G A T C C G A T
p-value:1e-10
log p-value:-2.314e+01
Information Content per bp:1.724
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.7 +/- 32.9bp
Average Position of motif in Background45.0 +/- 35.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGSYTCAAARTCAACA
GGGGTCAAAGTCCAAT
 C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AGSYTCAAARTCAACA
-----TCCAATCCACA
 C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGSYTCAAARTCAACA
CANAGNNCAAAGTCCA--
 A C G T A C G T C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:AGSYTCAAARTCAACA--
------SSAATCCACANN
 C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

HNF4G/MA0484.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGSYTCAAARTCAACA
AGAGTCCAAAGTCCA--
 A C G T C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AGSYTCAAARTCAACA
----NCTAAGTAAACA
 C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A
A C G T A C G T A C G T A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AGSYTCAAARTCAACA--
--GGCAAAAGTCCAATAA
 C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AGSYTCAAARTCAACA---
----NCWRWGTAAACANSV
 C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.59
Offset:6
Orientation:forward strand
Alignment:AGSYTCAAARTCAACA
------AAAGTAAACA
 C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AGSYTCAAARTCAACA----
-----CAAAGTAAACANNNN
 C G T A C T A G A T C G A G C T C G A T G A T C C G T A C T G A G T C A C T G A A C G T G T A C G C T A C T G A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A