Information for 14-AMYTAGGTAAACT (Motif 19)

G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T
Reverse Opposite:
C T G A A C T G A C G T A C G T A C G T C G T A A G T C A G T C A C G T C G T A C T A G A C G T A C G T
p-value:1e-11
log p-value:-2.727e+01
Information Content per bp:1.912
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.7 +/- 11.5bp
Average Position of motif in Background40.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AMYTAGGTAAACT
TATAAGTAGGTCAA--
 A C G T A C G T A C G T G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AMYTAGGTAAACT
AAYTAGGTCA---
 G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AMYTAGGTAAACT
-NCTAAGTAAACA
 G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AMYTAGGTAAACT
---AAAGTAAACA
 G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AMYTAGGTAAACT
---AAAGTAAACA
 G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AMYTAGGTAAACT----
--CAAAGTAAACANNNN
 G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:7
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AMYTAGGTAAACT---
----NDGTAAACARRN
 G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C T A G T C A G A C G T C G T A C G T A C G T A A G T C C G T A T C A G T C A G C T G A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AMYTAGGTAAACT---
-NCWRWGTAAACANSV
 G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer

Match Rank:9
Score:0.63
Offset:5
Orientation:forward strand
Alignment:AMYTAGGTAAACT
-----DGTAAACA
 G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AMYTAGGTAAACT--
---TATGTAAACANG
 G T C A G T C A A G T C A C G T C G T A C T A G A C T G A C G T C G T A C G T A C G T A A G T C A G C T A C G T A C G T
A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G