Information for 9-AAGGCAAGGC (Motif 16)

G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C
Reverse Opposite:
T C A G T A G C A T G C G A C T A G C T T C A G T A G C G A T C G A C T C G A T
p-value:1e-11
log p-value:-2.753e+01
Information Content per bp:1.682
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif8.05%
Number of Background Sequences with motif1313.6
Percentage of Background Sequences with motif2.82%
Average Position of motif in Targets47.7 +/- 28.6bp
Average Position of motif in Background51.1 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AAGGCAAGGC-
AAGGCAAGTGT
 G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAGGCAAGGC---
CAAAGGCGTGGCCAG
 A C G T A C G T G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C A C G T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGGCAAGGC-
CAGGTAAGTAT
 G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAGGCAAGGC
AAAAGTCAA---
 A C G T A C G T G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAGGCAAGGC
CAAGGHCANV-
 A C G T G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGGCAAGGC
DGGGYGKGGC
 G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C
C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AAGGCAAGGC--
AGGGGGCGGGGCTG
 A C G T A C G T G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C A C G T A C G T
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------AAGGCAAGGC
AAGTTCAAGGTCAGC-
 A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AAGGCAAGGC
-AGGCCTNG-
 G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C
A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T

Klf4/MA0039.2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAGGCAAGGC
TGGGTGGGGC
 G C T A C T G A C T A G A T C G A G T C T C G A C T G A T A C G A T C G A G T C
C G A T T C A G C T A G A T C G G A C T C A T G A C T G C T A G A C T G A G T C