Information for 2-TSTGGTCAGGGTGAAC (Motif 3)

A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C
Reverse Opposite:
C T A G C A G T A C G T A G T C C G T A A T G C A T G C A T G C A G C T A C T G T C G A T A G C A T G C G T C A T A G C C T G A
p-value:1e-14
log p-value:-3.233e+01
Information Content per bp:1.754
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.6 +/- 17.0bp
Average Position of motif in Background72.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:TSTGGTCAGGGTGAAC--
---GGTCANNGTGACCTN
 A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C A C G T A C G T
A C G T A C G T A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TSTGGTCAGGGTGAAC-
--AGGNCANNGTGACCT
 A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C A C G T
A C G T A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TSTGGTCAGGGTGAAC--
-CAGGTCACCGTGACCTT
 A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C A C G T A C G T
A C G T T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TSTGGTCAGGGTGAAC---
AGTAGGTCACNGTGACCTAC
 A C G T A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C A C G T A C G T A C G T
G C T A A T C G C A G T C T G A C T A G A C T G C A G T A T G C G T C A G A T C T A G C A C T G C A G T A T C G T G C A G A T C A T G C A G C T C G T A A T G C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TSTGGTCAGGGTGAAC-
TGACCTCTCNNTGACCT
 A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C A C G T
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TSTGGTCAGGGTGAAC
--AGGTCAAGGTCA--
 A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TSTGGTCAGGGTGAAC
--AGGTCAAGGTCA--
 A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TSTGGTCAGGGTGAAC-
BTGACCTCTNNHTGACCY
 A C G T A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

Vdr/MA0693.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TSTGGTCAGGGTGAAC--
--TGAACTCNATGAACTC
 A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C A C G T A C G T
A C G T A C G T G A C T T C A G T G C A T G C A G A T C A G C T A G T C C T G A C T G A G A C T T C A G T G C A T G C A G T A C A G C T A G T C

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TSTGGTCAGGGTGAAC
-----TCAAGGTCATA
 A G C T A T C G A C G T A T C G A C T G A G C T A G T C C T G A A T C G A T C G A T C G C G A T A C T G G T C A G T C A A G T C
A C G T A C G T A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A