Information for 12-CTCAVAGTCACCTCTG (Motif 28)

A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G
Reverse Opposite:
A T G C C G T A A C T G C G T A A C T G A C T G A C G T C T A G C G T A A G T C A C G T A C G T C A G T A T C G C T G A A C T G
p-value:1e-8
log p-value:-2.034e+01
Information Content per bp:1.813
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.2 +/- 13.2bp
Average Position of motif in Background82.5 +/- 8.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTCAVAGTCACCTCTG
TGACCTAAAGTAACCTCTG
 A C G T A C G T A C G T A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CTCAVAGTCACCTCTG
-------TGACCTYA-
 A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CTCAVAGTCACCTCTG
-------TGACCYCT-
 A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CTCAVAGTCACCTCTG
------GTGACCTT--
 A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTCAVAGTCACCTCTG
---NNACTTACCTN--
 A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G
A C G T A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CTCAVAGTCACCTCTG---
---NNNGTGACCTTTGNNN
 A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CTCAVAGTCACCTCTG
------CTGACCTTTG
 A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTCAVAGTCACCTCTG
TGACCTNTAGTAACCC---
 A C G T A C G T A C G T A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CTCAVAGTCACCTCTG------
-------TGACCTTTGCCCTAN
 A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

SREBF1/MA0595.1/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CTCAVAGTCACCTCTG
------ATCACCCCAC
 A G T C A G C T A T G C G T C A T C G A C G T A A C T G A C G T A G T C G T C A A G T C A G T C A C G T A G T C C G A T A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C