Information for 5-CCAGRGWTRAAWGWMA (Motif 10)

T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A
Reverse Opposite:
A C G T A C G T C G A T A G T C C G T A A C G T A C G T A G C T C G T A G C A T A G T C A G C T A G T C A C G T A C T G A C T G
p-value:1e-13
log p-value:-3.100e+01
Information Content per bp:1.779
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.3 +/- 17.1bp
Average Position of motif in Background61.2 +/- 10.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TCF7L2/MA0523.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCAGRGWTRAAWGWMA
--AAAGATCAAAGGAA
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A
A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCAGRGWTRAAWGWMA
--AGAAACGAAAGT--
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A
A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCAGRGWTRAAWGWMA
SCAGYCADGCATGAC-
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCAGRGWTRAAWGWMA
----ACATCAAAGGNA
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A
A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

PB0083.1_Tcf7_1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCAGRGWTRAAWGWMA--
-TATAGATCAAAGGAAAA
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A A C G T A C G T
A C G T A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PB0169.1_Sox15_2/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CCAGRGWTRAAWGWMA-----
------TTGAATGAAATTCGA
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAGRGWTRAAWGWMA
NNTNTCATGAATGT--
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:8
Score:0.52
Offset:8
Orientation:forward strand
Alignment:CCAGRGWTRAAWGWMA-
--------AAAAGTCAA
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

LEF1/MA0768.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CCAGRGWTRAAWGWMA-
--AAAGATCAAAGGGTT
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A A C G T
A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CCAGRGWTRAAWGWMA---
---ACTATGAATGAATGAT
 T G A C A G T C C G T A A C T G C T G A T A C G C G T A A C G T C T G A G T C A C G T A C G A T A C T G C G T A G T C A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T