Information for 5-AGGTGACCTG (Motif 4)

G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G
Reverse Opposite:
G T A C C T G A C A T G T C A G A G C T A T G C C G T A G T A C G A T C C G A T
p-value:1e-20
log p-value:-4.788e+01
Information Content per bp:1.681
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif12.29%
Number of Background Sequences with motif1904.9
Percentage of Background Sequences with motif4.02%
Average Position of motif in Targets54.6 +/- 26.0bp
Average Position of motif in Background49.8 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:AGGTGACCTG
--GTGACCTT
 G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:AGGTGACCTG
---TGACCT-
 G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:AGGTGACCTG-
---TGACCTYA
 G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGACCTG-----
NNNGTGACCTTTGNNN
 A C G T G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G A C G T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:AGGTGACCTG---
---TGACCTTGAT
 G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AGGTGACCTG--
--NTGACCTTGA
 G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G A C G T A C G T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

ESR2/MA0258.2/Jaspar

Match Rank:7
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------AGGTGACCTG
AGGNCANNGTGACCT-
 A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AGGTGACCTG-
---TGACCYCT
 G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G A C G T
A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGACCTG-----
NNNNTGACCCGGCGCG
 A C G T G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G A C G T A C G T A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

USF1/MA0093.2/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGGTGACCTG--
-GGTCACGTGGC
 G C T A C T A G C A T G G C A T A T C G T C G A A G T C G T A C G A C T A C T G A C G T A C G T
A C G T C T A G C T A G G A C T A G T C C G T A A G T C T C A G C G A T A C T G T C A G A G T C