Information for 11-GCTTGACAAA (Motif 8)

T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C T G A G C T A T G C G T C A C G T A A T C G A G T C
p-value:1e-12
log p-value:-2.949e+01
Information Content per bp:1.843
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.47%
Number of Background Sequences with motif115.3
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets46.3 +/- 25.7bp
Average Position of motif in Background47.5 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS1/MA0498.2/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GCTTGACAAA
--TTGACAG-
 T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A
A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCTTGACAAA
--TTGACAGG
 T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A
A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GCTTGACAAA
-CTTGGCAA-
 T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCTTGACAAA
-RHTGWCAR-
 T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A
A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCTTGACAAA
ARNTGACA--
 T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GCTTGACAAA
--TTGACAGC
 T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A
A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCTTGACAAA----
ACCGTGACTAATTNN
 A C G T T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCTTGACAAA
NNTTGGCANN
 T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTTGACAAA
NCGTGACN--
 T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A
T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCTTGACAAA-
-----ACAAAG
 T C A G A T G C C G A T A C G T A T C G C T G A A G T C C G T A T G C A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G