Information for 19-TGTGAGACTAGCC (Motif 24)

A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T C G T A A C T G A C G T A G T C A C G T A G T C C G T A A G T C C G T A
p-value:1e-6
log p-value:-1.418e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.3 +/- 12.5bp
Average Position of motif in Background43.2 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGTGAGACTAGCC
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGTGAGACTAGCC
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGTGAGACTAGCC--
----NNACTTGCCTT
 A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TGTGAGACTAGCC----
--TGACANARRCCAGRC
 A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TGTGAGACTAGCC-
----CGTCTAGACA
 A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

MGA/MA0801.1/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TGTGAGACTAGCC
AGGTGTGA--------
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C
C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TGTGAGACTAGCC
ACTGAAACCA---
 A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:8
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---TGTGAGACTAGCC
AGGTGTGA--------
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C
C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-TGTGAGACTAGCC
AGGTGTGAAM----
 A C G T A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:TGTGAGACTAGCC
--BCAGACWA---
 A C G T A C T G A C G T A C T G C G T A A C T G C G T A A G T C A C G T C G T A A C T G A G T C A G T C
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T