Information for 10-GCAKAKAAASRTC (Motif 10)

C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C
Reverse Opposite:
A C T G C G T A A G C T A T G C A C G T A C G T A C G T G T A C A C G T G T A C A C G T A C T G A G T C
p-value:1e-13
log p-value:-3.113e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.7 +/- 14.6bp
Average Position of motif in Background72.0 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCAKAKAAASRTC-
--ANGNAAAGGTCA
 C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C A C G T
A C G T A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCAKAKAAASRTC
ATTTGCATACAATGG--
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

GATA2/MA0036.2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCAKAKAAASRTC-
NCAGATAAGAANNN
 C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C A C G T
C G T A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A C G T A G A C T G A T C G C A T

MF0005.1_Forkhead_class/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCAKAKAAASRTC
--AAATAAACA--
 C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C
A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCAKAKAAASRTC---
--GGAGAAAGGTGCGA
 C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCAKAKAAASRTC---
-NAGATWNBNATCTNN
 C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C A C G T A C G T A C G T
A C G T A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

Gata1/MA0035.3/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAKAKAAASRTC
ANAGATAAGAA--
 C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCAKAKAAASRTC-
AAACAGACAAAGGAAT
 A C G T A C G T C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCAKAKAAASRTC
CGAAGCACACAAAATA-
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCAKAKAAASRTC-
AGGTCAACTAAAGGTCA
 A C G T A C G T A C G T C T A G A G T C C G T A C A T G C G T A A C T G C G T A C G T A C G T A A T C G C T G A A C G T A G T C A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A