Information for 2-TGAGTAGTTTGGVTAA (Motif 2)

A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A
Reverse Opposite:
A G C T A G C T C G T A A G T C A G T C G T A C C G T A G T C A C G T A A G T C C G A T C T G A G T A C A G C T A G T C T G C A
p-value:1e-11
log p-value:-2.752e+01
Information Content per bp:1.790
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.6 +/- 28.4bp
Average Position of motif in Background34.8 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TGAGTAGTTTGGVTAA
NNTGTTTATTTTGGCA--
 A C G T A C G T A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T

PB0035.1_Irf5_1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGAGTAGTTTGGVTAA--
---NTGGTTTCGGTTNNN
 A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G A C T G A C G T G C A T A G C T A G T C C T A G C T A G G A C T G C A T G A C T G C T A C G A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGAGTAGTTTGGVTAA-
NNCTTTGTTTTGNTNNN
 A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0036.1_Irf6_1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGAGTAGTTTGGVTAA-
NNNTTGGTTTCGNTNNN
 A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A A C G T
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G

PB0034.1_Irf4_1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGAGTAGTTTGGVTAA-
--TNTGGTTTCGATACN
 A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A A C G T
A C G T A C G T G C A T A C G T G A C T C T A G A T C G C G A T C G A T A C G T A G T C C T A G C T G A G C A T G C T A G A T C A C T G

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGAGTAGTTTGGVTAA-
NNTNNTGTCTGGNNTNG
 A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TGAGTAGTTTGGVTAA
----CTGTCTGG----
 A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.53
Offset:8
Orientation:forward strand
Alignment:TGAGTAGTTTGGVTAA
--------TTGGCA--
 A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TGAGTAGTTTGGVTAA
----TWGTCTGV----
 A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TGAGTAGTTTGGVTAA
NWTGATTRGRTTAWN---
 A C G T A C G T A C G T A C T G C T G A A C T G A G C T C G T A A C T G A C G T A C G T A C G T A C T G A C T G T A C G C G A T C T G A C T G A
C G T A G C A T C G A T C T A G C G T A A C G T A C G T C T G A T C A G C T A G A C G T A C G T G C T A C G T A G T A C A C G T A C G T A C G T