Information for 9-GAAAACCCAATGCTGG (Motif 13)

A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G
Reverse Opposite:
A T G C A G T C C G T A C T A G T A G C G T C A A C G T C A G T A C T G T A C G C T A G A G C T A C G T A C G T A G C T T A G C
p-value:1e-9
log p-value:-2.205e+01
Information Content per bp:1.716
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.8 +/- 26.9bp
Average Position of motif in Background30.0 +/- 10.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GAAAACCCAATGCTGG
GGCAAAAGTCCAATAA---
 A C G T A C G T A C G T A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GAAAACCCAATGCTGG-
-----CCCCCTGCTGTG
 A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GAAAACCCAATGCTGG----
-----TCNCCTGCTGNGNNN
 A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GAAAACCCAATGCTGG---
--AATCGCACTGCATTCCG
 A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G A C G T A C G T A C G T
A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

GCM1/MA0646.1/Jaspar

Match Rank:5
Score:0.49
Offset:8
Orientation:forward strand
Alignment:GAAAACCCAATGCTGG---
--------CATGCGGGTAC
 A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

GCM2/MA0767.1/Jaspar

Match Rank:6
Score:0.49
Offset:8
Orientation:forward strand
Alignment:GAAAACCCAATGCTGG--
--------TATGCGGGTA
 A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:7
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:GAAAACCCAATGCTGG-----
-----NNNNATGCGGGTNNNN
 A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GAAAACCCAATGCTGG
GGGRAARRGRMCAGMTG-
 A C G T A C G T A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.48
Offset:3
Orientation:forward strand
Alignment:GAAAACCCAATGCTGG--
---GGCCYCCTGCTGDGH
 A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-GAAAACCCAATGCTGG
GGAAATTCCC-------
 A C G T A C T G C T G A G T C A C G T A C T G A A G T C A G T C T G A C G T C A G T C A A C G T A C T G A G T C C G A T A C T G A T C G
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T