Information for 3-KAGARATGRTAYA (Motif 11)

A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A
Reverse Opposite:
A C G T C T A G A G C T C G T A A G T C A G T C C G T A A C G T A G C T A C G T A G T C A C G T G T A C
p-value:1e-9
log p-value:-2.225e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.8 +/- 13.5bp
Average Position of motif in Background64.6 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:KAGARATGRTAYA--
----NTTGATACATT
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

PH0161.1_Six1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:KAGARATGRTAYA-----
-ANNNATGATACCCCATC
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C

PH0166.1_Six6_2/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:KAGARATGRTAYA-----
-AATNTTGATACCCTATN
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T

Mecom/MA0029.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:KAGARATGRTAYA-
AAGATAAGATAACA
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:KAGARATGRTAYA
AACAGATGGT---
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:KAGARATGRTAYA---
-NNATNTGATANNNNN
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A A C G T A C G T A C G T
A C G T G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:KAGARATGRTAYA-----
-ANANNTGATACCCNATN
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:KAGARATGRTAYA
CGGAAGTGAAAC-
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:KAGARATGRTAYA-----
-ANANNTGATACCCTATN
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T

PH0162.1_Six2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:KAGARATGRTAYA-----
-ANANGTGATACCCCATT
 A C T G C G T A A C T G C G T A C T G A C G T A A C G T A C T G C T A G C G A T C T G A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C T G A C G T A G T A C C T A G A G C T C A T G C G T A A G C T G T C A A G T C T G A C A G T C A G T C G T C A C G A T G A C T