Information for 7-RGGAAGAWGGTCA (Motif 8)

C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A A G T C A G T C C G A T C G A T A G T C A C G T A C G T A G T C A G T C A G T C
p-value:1e-14
log p-value:-3.273e+01
Information Content per bp:1.917
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.7 +/- 16.2bp
Average Position of motif in Background61.0 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:RGGAAGAWGGTCA
---ATCAAGGTCA
 C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A
A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:RGGAAGAWGGTCA
---AAYTAGGTCA
 C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PB0124.1_Gabpa_2/Jaspar

Match Rank:3
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------RGGAAGAWGGTCA
NNNNGGGGGAAGANGG---
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:4
Score:0.66
Offset:4
Orientation:forward strand
Alignment:RGGAAGAWGGTCA-
----TCAAGGTCAT
 C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.65
Offset:6
Orientation:forward strand
Alignment:RGGAAGAWGGTCA-
------AAGGTCAC
 C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RGGAAGAWGGTCA-
TATAAGTAGGTCAA
 C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.65
Offset:7
Orientation:forward strand
Alignment:RGGAAGAWGGTCA
-------AGGTCA
 C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:RGGAAGAWGGTCA-
----TCAAGGTCAN
 C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

Nr2f6/MA0677.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RGGAAGAWGGTCA
GAGGTCAAAGGTCA
 A C G T C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Rxra/MA0512.2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RGGAAGAWGGTCA
GGGGTCAAAGGTCA
 A C G T C T A G C T A G A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C T G A C G T A T G C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A