Information for 22-AGGTCACTGGVAGGCC (Motif 31)

C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C
Reverse Opposite:
C T A G C T A G A T G C A G T C C G A T A T G C G T A C A G T C C G T A C T A G A C G T C A T G C G T A A G T C A G T C G A C T
p-value:1e-8
log p-value:-1.988e+01
Information Content per bp:1.765
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets61.0 +/- 20.1bp
Average Position of motif in Background61.6 +/- 37.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARA::RXRA/MA0159.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGTCACTGGVAGGCC-
AGGTCACGGAGAGGTCA
 C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C A C G T
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGTCACTGGVAGGCC--
RGGTCADNNAGAGGTCAV
 C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGTCACTGGVAGGCC-
AGGTCAACTAAAGGTCA
 C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGTCACTGGVAGGCC
AGGTCA----------
 C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGTCACTGGVAGGCC-
AGGTCATGCAAAGGTCA
 C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C A C G T
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGTCACTGGVAGGCC
AAGGTCAC---------
 A C G T C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGTCACTGGVAGGCC
CAAAGGTCAAGGG------
 A C G T A C G T A C G T C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACTGGVAGGCC
AGRGGTCA----------
 A C G T A C G T C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACTGGVAGGCC
TRAGGTCA----------
 A C G T A C G T C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGTCACTGGVAGGCC
GTAGGTCACTGGGTCA--
 A C G T A C G T C T G A A C T G C T A G A C G T G T A C G T C A A G T C C G A T A C T G A C T G T A C G C G T A A C T G T A C G A G T C A G T C
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T