Information for 15-AGWWCAGGTTNCCAAC (Motif 19)

C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C
Reverse Opposite:
C A T G A G C T A C G T C A T G C A T G C T G A C G T A C G T A A G T C A G T C A C G T A C T G G C A T C G A T A G T C A G C T
p-value:1e-11
log p-value:-2.553e+01
Information Content per bp:1.738
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 14.0bp
Average Position of motif in Background53.8 +/- 8.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGWWCAGGTTNCCAAC
GKVTCADRTTWC----
 C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AGWWCAGGTTNCCAAC
-----CGGTTTCAAA-
 C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C
A C G T A C G T A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.56
Offset:7
Orientation:forward strand
Alignment:AGWWCAGGTTNCCAAC-
-------GGTGCCAAGT
 C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGWWCAGGTTNCCAAC
GKMTCADRTTWC----
 C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:AGWWCAGGTTNCCAAC
---------TGCCAA-
 C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.51
Offset:8
Orientation:forward strand
Alignment:AGWWCAGGTTNCCAAC
--------TTGCCAAG
 C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.51
Offset:8
Orientation:forward strand
Alignment:AGWWCAGGTTNCCAAC-
--------ATGCCAACC
 C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:forward strand
Alignment:AGWWCAGGTTNCCAAC
-------CGTGCCAAG
 C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---AGWWCAGGTTNCCAAC
CCAGGAACAG---------
 A C G T A C G T A C G T C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFCP2/MA0145.3/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGWWCAGGTTNCCAAC
-AAACCGGTTT-----
 C T G A A C T G C G T A C G T A G T A C C G T A T C A G C T A G C G A T A C G T A G C T G T A C G T A C C G T A C T G A G A T C
A C G T C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T A C G T A C G T A C G T A C G T A C G T