Information for 12-CCTGCTGCTAATTCTC (Motif 16)

A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C
Reverse Opposite:
C T A G T G C A A C T G T C G A C G T A C G A T A C G T C G T A A C T G A T G C C T G A C T A G A T G C C G T A A C T G T C A G
p-value:1e-11
log p-value:-2.553e+01
Information Content per bp:1.730
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.6 +/- 30.5bp
Average Position of motif in Background40.6 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC/MA0648.1/Jaspar

Match Rank:1
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CCTGCTGCTAATTCTC
------GCTAATCCCC
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:CCTGCTGCTAATTCTC--
-------CTAATCCTCTT
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.57
Offset:6
Orientation:forward strand
Alignment:CCTGCTGCTAATTCTC
------CCTAATCCGC
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCTGCTGCTAATTCTC--
--GNNAGCTAATCCCCCN
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C A C G T A C G T
A C G T A C G T A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CCTGCTGCTAATTCTC
------GCTAATCC--
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CCTGCTGCTAATTCTC
------NYTAATCCYB
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PH0035.1_Gsc/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCTGCTGCTAATTCTC---
--AATCGTTAATCCCTTTA
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

PH0015.1_Crx/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCTGCTGCTAATTCTC----
----AGGCTAATCCCCAANG
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CCTGCTGCTAATTCTC
-------YTAATCCY-
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T

PH0032.1_Evx2/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCTGCTGCTAATTCTC---
--CACCGCTAATTAGCGGT
 A G T C G T A C G A C T A T C G A G T C A G C T A T C G A G T C A C G T T C G A G C T A G A C T A C G T A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T