Information for 2-CAAAKDWMAAGGTCAT (Motif 3)

T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T
Reverse Opposite:
T C G A C G A T A C T G G C T A G A T C G T A C G C A T C A G T C A T G G C A T G T C A G T C A G C A T G A C T C G A T A C T G
p-value:1e-24
log p-value:-5.636e+01
Information Content per bp:1.524
Number of Target Sequences with motif116.0
Percentage of Target Sequences with motif15.63%
Number of Background Sequences with motif2463.0
Percentage of Background Sequences with motif5.28%
Average Position of motif in Targets52.1 +/- 24.3bp
Average Position of motif in Background49.3 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Esrrg/MA0643.1/Jaspar

Match Rank:1
Score:0.77
Offset:6
Orientation:forward strand
Alignment:CAAAKDWMAAGGTCAT
------TCAAGGTCAT
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.77
Offset:6
Orientation:reverse strand
Alignment:CAAAKDWMAAGGTCAT
------TCAAGGTCAN
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.77
Offset:5
Orientation:forward strand
Alignment:CAAAKDWMAAGGTCAT
-----ATCAAGGTCA-
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.77
Offset:7
Orientation:forward strand
Alignment:CAAAKDWMAAGGTCAT
-------TRAGGTCA-
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.76
Offset:8
Orientation:forward strand
Alignment:CAAAKDWMAAGGTCAT
--------AAGGTCAC
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

ESRRB/MA0141.3/Jaspar

Match Rank:6
Score:0.76
Offset:6
Orientation:forward strand
Alignment:CAAAKDWMAAGGTCAT-
------TCAAGGTCATA
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CAAAKDWMAAGGTCAT-
--AAGTTCAAGGTCAGC
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T A C G T
A C G T A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.75
Offset:7
Orientation:forward strand
Alignment:CAAAKDWMAAGGTCAT-
-------CAAGGHCANV
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:CAAAKDWMAAGGTCAT
---ANGNAAAGGTCA-
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T
A C G T A C G T A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CAAAKDWMAAGGTCAT----
---TATTCAAGGTCATGCGA
 T G A C G C T A C T G A C G T A C A G T C A G T C G T A G T A C G T C A C G T A C A T G C T A G C G A T T G A C C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A