Information for 11-TCTCCCTTGRSCTGAA (Motif 15)

A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
Reverse Opposite:
A G C T G A C T T G A C G C T A A C T G T A C G A G C T G T A C G T C A C T G A C T A G C T A G A T C G C G T A C T A G C T G A
p-value:1e-12
log p-value:-2.921e+01
Information Content per bp:1.638
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.37%
Number of Background Sequences with motif232.1
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets55.6 +/- 24.1bp
Average Position of motif in Background45.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCTCCCTTGRSCTGAA
-TGACCTTGACCT---
 A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCTCCCTTGRSCTGAA
TGACCTTTGACCTN--
 A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TCTCCCTTGRSCTGAA
TGACCTTTGCCCTA--
 A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TCTCCCTTGRSCTGAA
-TGACCTTGACCT---
 A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCTCCCTTGRSCTGAA
TGACCTTTGACCTC--
 A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCTCCCTTGRSCTGAA
TGACCTTTGACCCC--
 A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TCTCCCTTGRSCTGAA
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A C G T A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCTCCCTTGRSCTGAA
TGACCTTTGACCCC--
 A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCTCCCTTGRSCTGAA
GTTGACCTTTGACCTTT-
 A C G T A C G T A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCTCCCTTGRSCTGAA
TGACCTTTGCCCTAN-
 A G C T G A T C G C A T A T G C G A T C A G T C A G C T A C G T C A T G T C G A A T G C T G A C C G A T A C T G C T G A C T G A
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T