Information for 8-GRGGTYAAGATSM (Motif 11)

A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
Reverse Opposite:
A C G T A T G C C G T A A G C T A G T C A C G T A C G T C T G A C G T A A G T C A G T C A G C T A G T C
p-value:1e-13
log p-value:-3.146e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.5 +/- 22.5bp
Average Position of motif in Background52.7 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GRGGTYAAGATSM
-AGGTCAAGGTCA
 A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GRGGTYAAGATSM
CTCCAGGGGTCAATTGA-
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GRGGTYAAGATSM
NTNNNGGGGTCANGNNN-
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GRGGTYAAGATSM
AGRGGTCA------
 A C G T A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GRGGTYAAGATSM
-AGGTCAAGGTCA
 A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GRGGTYAAGATSM
GGCGAGGGGTCAAGGGC-
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GRGGTYAAGATSM
TRAGGTCA------
 A C G T A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GRGGTYAAGATSM
ARGAGGMCAAAATGW
 A C G T A C G T A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GRGGTYAAGATSM
-AGGTCA------
 A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GRGGTYAAGATSM----
AAGGTCACGGTGACCTG
 A C T G C T G A A C T G C T A G A C G T G A C T C G T A C G T A A C T G C T G A A C G T A T C G G T C A A C G T A C G T A C G T A C G T
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G