Information for 18-YMRATATGCATKG (Motif 18)

A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G
Reverse Opposite:
A G T C G T C A C G T A A C G T A C T G A G T C C G T A A C G T C G T A A C G T A G C T A C T G C T A G
p-value:1e-8
log p-value:-1.860e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.8 +/- 23.7bp
Average Position of motif in Background32.1 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:YMRATATGCATKG
-GAATATTCAT--
 A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:YMRATATGCATKG
-GHATATKCAT--
 A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:YMRATATGCATKG
TTCATTTGCATAT
 A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

PH0148.1_Pou3f3/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-YMRATATGCATKG---
TNNATTATGCATANNTT
 A C G T A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-YMRATATGCATKG-
ATGAATATTCATGAG
 A C G T A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---YMRATATGCATKG
AYATGYATATGCATR-
 A C G T A C G T A C G T A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:YMRATATGCATKG
CTCATTTGCATW-
 A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-YMRATATGCATKG--
TNTAATTTGCATANNN
 A C G T A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:YMRATATGCATKG
BTVATTWGCATA-
 A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-YMRATATGCATKG--
TNTAATTTGCATACNA
 A C G T A G T C G T A C C T G A C G T A C G A T G T C A A C G T A C T G A G T C C G T A A C G T A C G T A C T G A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A