Information for 16-TCAAAAAGCCATT (Motif 17)

A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A C G A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C T G C T G A
p-value:1e-8
log p-value:-1.974e+01
Information Content per bp:1.913
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 18.4bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TCAAAAAGCCATT----
---AAAAACCATTAAGG
 A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PH0006.1_Barhl2/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TCAAAAAGCCATT-----
--AAAAACCAATTAAGAA
 A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:forward strand
Alignment:TCAAAAAGCCATT---
------GGCCATTAAC
 A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:4
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TCAAAAAGCCATT--
-----AAACMATTAN
 A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

Rarg/MA0859.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TCAAAAAGCCATT
AAGGTCAAAAGGTCAA-
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T

RARA/MA0729.1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TCAAAAAGCCATT-
GAGGTCAAAAGGTCAATG
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

YY2/MA0748.1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TCAAAAAGCCATT-
---GTCCGCCATTA
 A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

Rarb/MA0857.1/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAAAGCCATT
AAAGGTCAAAAGGTCA--
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TCAAAAAGCCATT
---AAAAGTCAA-
 A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TCAAAAAGCCATT--
---ACTAGCCAATCA
 A G C T A G T C C G T A G T C A C G T A G T C A C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A