Information for 7-GAATTAACAA (Motif 14)

A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A
Reverse Opposite:
A G C T C G A T C T A G A C G T A G C T G C T A C G T A A C G T A C G T A G T C
p-value:1e-8
log p-value:-2.019e+01
Information Content per bp:1.750
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif138.8
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets54.1 +/- 17.2bp
Average Position of motif in Background49.8 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxq1/MA0040.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:GAATTAACAA--
-AATAAACAATN
 A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A A C G T A C G T
A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------GAATTAACAA-
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------GAATTAACAA-
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

PH0035.1_Gsc/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GAATTAACAA--
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

Foxj2/MA0614.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GAATTAACAA
--GTAAACAA
 A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A
A C G T A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A

PH0121.1_Obox1/Jaspar

Match Rank:6
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GAATTAACAA-
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0122.1_Obox2/Jaspar

Match Rank:7
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GAATTAACAA-
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAATTAACAA
NGGGATTA----
 A C G T A C G T A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAATTAACAA
GGGATTAA---
 A C G T A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAATTAACAA
NNGGATTAGN--
 A C G T A C G T A C T G G T C A G T C A A C G T C G A T C T G A G T C A A G T C G C T A C T G A
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T